Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs72167101 | chr11:123276724 | CTT/C | 6.24E-5 | 400 | 16.3 | 16.5 | 9.43 | KM Plot |
| HNSC | rs7238153 | chr18:75580407 | C/T | 6.99E-9 | 412 | 17.1 | 15.4 | 3 | KM Plot |
| HNSC | rs7238317 | chr18:67976000 | C/T | 3.24E-9 | 412 | 16.68 | 15.97 | 3 | KM Plot |
| HNSC | rs72556223 | chr6:74361719 | C/CTG | 5.41E-5 | 409 | 12.03 | 13.12 | 17.12 | KM Plot |
| HNSC | rs7260934 | chr20:44436875 | T/C | 5.56E-7 | 409 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs72659421 | chr1:38083471 | G/A | 5.67E-5 | 411 | 16.33 | 16.23 | 4.73 | KM Plot |
| HNSC | rs72659424 | chr1:38084512 | A/T | 5.67E-5 | 411 | 16.33 | 16.23 | 4.73 | KM Plot |
| HNSC | rs72659426 | chr1:38087912 | C/A | 5.67E-5 | 411 | 16.33 | 16.23 | 4.73 | KM Plot |
| HNSC | rs72706012 | chr1:161716340 | C/T | 5.27E-5 | 408 | 16.17 | 17.3 | 4.3 | KM Plot |
| HNSC | rs72706014 | chr1:161720349 | C/G | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs72706022 | chr1:161724127 | T/A | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs72706023 | chr1:161724249 | T/C | 5.89E-5 | 407 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs72706028 | chr1:161729440 | T/G | 6.96E-5 | 405 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs72709390 | chr1:173690198 | A/G | 2.61E-6 | 408 | 16.68 | 14.77 | 3.73 | KM Plot |
| HNSC | rs7271230 | chr20:44447118 | C/T | 5.37E-7 | 410 | 16.33 | 15.87 | 9.13 | KM Plot |